genome-to-sqlite by dogsheep

5 downloads this week        Star

README source code


PyPI CircleCI License

Import your genome into a SQLite database.

How to install

$ pip install genome-to-sqlite

How to use

First, export your genome. This tool has only been tested against 23andMe so far. You can request an export of your genome from

Now you can convert the resulting file to SQLite like so:

$ genome-to-sqlite genome.db

A progress bar will be displayed. You can disable this using --silent.

Importing genome  [#----------------]    5%  00:01:33

You can explore the resulting data using Datasette like this:

$ datasette genome.db --config facet_time_limit_ms:1000

Bumping up the facet time limit is useful in order to enable faceting by chromosome: